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Services/Tier 05

Tier 05 · 4 services

Pipeline Engineering & Cloud

Reproducible, scalable, and cost-efficient — pipelines that run anywhere.

Core4 services
01

Custom Pipeline Development

Core

Summary

Design and implementation of end-to-end bioinformatics workflows in Nextflow, Snakemake, Galaxy, or WDL — leveraging nf-core modules where applicable, custom logic where needed.

Mature, production-ready service

Tools Used

Nextflownf-coreSnakemakeGalaxyWDL/CromwellCondaMamba

Ideal Client

Core facilities, biotech data teams, and researchers with recurring or high-volume analysis workflows needing automation and auditability.

02

Reproducible / FAIR Workflows & Containerisation

Core

Summary

FAIR-principles implementation for bioinformatics pipelines — containerised environments, versioned software stacks, workflow provenance, and data management plans for publication and compliance.

Mature, production-ready service

Tools Used

DockerSingularity/ApptainerCondaGitHub ActionsZenodoDVCCWL

Ideal Client

Academic groups publishing workflows, regulated biotech environments, and GxP/GLP settings where reproducibility is auditable.

03

Cloud & HPC Bioinformatics

Core

Summary

Deployment of bioinformatics workloads on AWS, GCP, or on-premises HPC clusters — spot-instance strategies, cost-optimised compute scheduling, and Nextflow Tower orchestration.

Mature, production-ready service

Tools Used

AWS BatchGCP Life SciencesNextflow TowerSlurmPBS/TorqueKubernetesTerraform

Ideal Client

Genomics companies scaling analysis, hospitals migrating to cloud, and startups avoiding capital expenditure on on-premises infrastructure.

04

Secure Data Management & Compliance

Core

Summary

Architecture and implementation of secure genomic data storage, access control, audit trails, and governance frameworks — covering GDPR, HIPAA, and GA4GH data-sharing standards.

Mature, production-ready service

Tools Used

AWS S3 + KMSiRODSGlobusGA4GH PassportsHashiCorp VaultData Use Ontology

Ideal Client

Clinical genomics teams, hospital informatics groups, and pharma organisations handling patient-level or controlled-access genomic data.

Interested in Pipeline Engineering & Cloud?

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